Research Articles

Collection of Research Articles

Cell-Specific Information Processing in Segregating Populations of Eph Receptor Ephrin–Expressing Cells.

Science. 2009 Dec 11;326(5959):1502-9.

A Mitotic Phosphorylation Feedback Network Connects Cdk1, Plk1, 53BP1, and Chk2 to Inactivate the G(2)/M DNA Damage Checkpoint.

PLoS Biol. 2010 Jan 26;8(1):e1000287.

Protein disorder prediction: implications for structural proteomics.

Structure. 2003 Nov;11(11):1453-9.

A comparative study of the relationship between protein structure and beta-aggregation in globular and intrinsically disordered proteins.

J Mol Biol. 2004 Sep 3;342(1):345-53.

Systematic discovery of new recognition peptides mediating protein interaction networks.

PLoS Biol. 2005 Dec;3(12):e405. Epub 2005 Nov 15.

ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins.

Nucleic Acids Res. 2003 Jul 1;31(13):3625-30.

GlobPlot: Exploring protein sequences for globularity and disorder.

Nucleic Acids Res. 2003 Jul 1;31(13):3701-8.

BLAST2SRS, a web server for flexible retrieval of related protein sequences in the SWISS-PROT and SPTrEMBL databases.

Nucleic Acids Res. 2003 Jul 1;31(13):3792-4.

WW domains provide a platform for the assembly of multiprotein networks.

Mol Cell Biol. 2005 Aug;25(16):7092-106.

PhD thesis (Rune Linding)

EMBL April 2004.

Cell-Specific Information Processing in Segregating Cell Populations

In this Research Article published in Science, we provide the first systems- and cell-specific network models of contact-initiated signaling between two distinct cell types.

Systematic discovery of in vivo phosphorylation networks.

Cell. 2007 Jun 29;129(7):1415-26. Epub 2007 Jun 14.

NetworKIN: a resource for exploring cellular phosphorylation networks.

Nucleic Acids Res. 2008 Jan;36(Database issue):D695-9. Epub 2007 Nov 2.

Linear motif atlas for phosphorylation-dependent signaling.

Sci Signal. 2008 Sep 2;1(35):ra2.

Phosphorylation networks regulating JNK activity in diverse genetic backgrounds.

Science. 2008 Oct 17;322(5900):453-6.

Dynamic modularity in protein interaction networks predicts breast cancer outcome.

Nat Biotechnol. 2009 Feb;27(2):199-204. Epub 2009 Feb 1.

Dissecting the interface between signaling and transcriptional regulation in human B cells.

Pac Symp Biocomput. 2009:264-75.

Positive selection of tyrosine loss in metazoan evolution.

Science. 2009 Sep 25;325(5948):1686-8. Epub 2009 Jul 9.

Comparative analysis reveals conserved protein phosphorylation networks implicated in multiple diseases.

Sci Signal. 2009 Jul 28;2(81):ra39.

Phosphorylation dynamics during early differentiation of human embryonic stem cells.

Cell Stem Cell. 2009 Aug 7;5(2):214-26.