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Research Articles

Collection of Research Articles
Response to Comment on “Positive Selection of Tyrosine Loss in Metazoan Evolution”
Science 20 May 2011: Vol. 332 no. 6032 p. 917
Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles).
Proteomics. 2011 Nov 8.
Recommendations for mass spectrometry data quality metrics for open access data (Corollary to the Amsterdam principles).
J Proteome Res. 2011 Dec 8.
Recommendations for mass spectrometry data quality metrics for open access data (Corollary to the Amsterdam principles).
Mol Cell Proteomics. 2011 Dec;10(12):O111.015446.
Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles).
Proteomics Clin Appl. 2011 Dec;5(11-12):580-9.
Cell-Specific Information Processing in Segregating Populations of Eph Receptor Ephrin–Expressing Cells.
Science. 2009 Dec 11;326(5959):1502-9.
Protein disorder prediction: implications for structural proteomics.
Structure. 2003 Nov;11(11):1453-9.
A comparative study of the relationship between protein structure and beta-aggregation in globular and intrinsically disordered proteins.
J Mol Biol. 2004 Sep 3;342(1):345-53.
Systematic discovery of new recognition peptides mediating protein interaction networks.
PLoS Biol. 2005 Dec;3(12):e405. Epub 2005 Nov 15.
ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins.
Nucleic Acids Res. 2003 Jul 1;31(13):3625-30.
GlobPlot: Exploring protein sequences for globularity and disorder.
Nucleic Acids Res. 2003 Jul 1;31(13):3701-8.
BLAST2SRS, a web server for flexible retrieval of related protein sequences in the SWISS-PROT and SPTrEMBL databases.
Nucleic Acids Res. 2003 Jul 1;31(13):3792-4.
WW domains provide a platform for the assembly of multiprotein networks.
Mol Cell Biol. 2005 Aug;25(16):7092-106.
PhD thesis (Rune Linding)
EMBL April 2004.
Cell-Specific Information Processing in Segregating Cell Populations
In this Research Article published in Science, we provide the first systems- and cell-specific network models of contact-initiated signaling between two distinct cell types.
Systematic discovery of in vivo phosphorylation networks.
Cell. 2007 Jun 29;129(7):1415-26. Epub 2007 Jun 14.
NetworKIN: a resource for exploring cellular phosphorylation networks.
Nucleic Acids Res. 2008 Jan;36(Database issue):D695-9. Epub 2007 Nov 2.
Linear motif atlas for phosphorylation-dependent signaling.
Sci Signal. 2008 Sep 2;1(35):ra2.
Phosphorylation networks regulating JNK activity in diverse genetic backgrounds.
Science. 2008 Oct 17;322(5900):453-6.
Dynamic modularity in protein interaction networks predicts breast cancer outcome.
Nat Biotechnol. 2009 Feb;27(2):199-204. Epub 2009 Feb 1.
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