Selected Publications
Collection of selected publications
- Cell-Specific Information Processing in Segregating Populations of Eph Receptor Ephrin–Expressing Cells.
- Science. 2009 Dec 11;326(5959):1502-9.
- Digital ‘Rosetta Stone’ Decrypts How Mutations Rewire Cancer Cells
- Scientists have discovered how genetic cancer mutations systematically attack the networks controlling human cells, knowledge critical for the future development of personalized precision cancer treatments.
- Protein disorder prediction: implications for structural proteomics.
- Structure. 2003 Nov;11(11):1453-9.
- Systematic discovery of new recognition peptides mediating protein interaction networks.
- PLoS Biol. 2005 Dec;3(12):e405. Epub 2005 Nov 15.
- ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins.
- Nucleic Acids Res. 2003 Jul 1;31(13):3625-30.
- GlobPlot: Exploring protein sequences for globularity and disorder.
- Nucleic Acids Res. 2003 Jul 1;31(13):3701-8.
- Synthetic modular systems - reverse engineering of signal transduction.
- FEBS Lett. 2005 Mar 21;579(8):1808-14.
- Navigating cancer network attractors for tumor-specific therapy
- Nature Biotechnology 30, 842–848 (2012)
- Cells, shared memory and breaking the PTM code
- Molecular Systems Biology 8 Article number: 598 doi:10.1038/msb.2012.33
- Network Medicine Strikes a Blow against Breast Cancer
- Cell. 2012 May 11;149(4):731-3.
- Response to Comment on “Positive Selection of Tyrosine Loss in Metazoan Evolution”
- Science 20 May 2011: Vol. 332 no. 6032 p. 917
- Kinome-wide Decoding of Network-Attacking Mutations Rewiring Cancer Signaling.
- Cell. 2015 Sep 16. pii: S0092-8674(15)01108-3. doi: 10.1016/j.cell.2015.08.056.
- Unmasking Determinants of Specificity in the Human Kinome.
- Cell. 2015 Sep 16. pii: S0092-8674(15)01109-5. doi: 10.1016/j.cell.2015.08.057.
- Systematic discovery of in vivo phosphorylation networks.
- Cell. 2007 Jun 29;129(7):1415-26. Epub 2007 Jun 14.
- Linear motif atlas for phosphorylation-dependent signaling.
- Sci Signal. 2008 Sep 2;1(35):ra2.
- Phosphorylation networks regulating JNK activity in diverse genetic backgrounds.
- Science. 2008 Oct 17;322(5900):453-6.
- Positive selection of tyrosine loss in metazoan evolution.
- Science. 2009 Sep 25;325(5948):1686-8. Epub 2009 Jul 9.
- Comparative analysis reveals conserved protein phosphorylation networks implicated in multiple diseases.
- Sci Signal. 2009 Jul 28;2(81):ra39.
- Dynamic Rearrangement of Cell States Detected by Systematic Screening of Sequential Anticancer Treatments
- Cell Reports 2017 Sep 19;20(12):2784-2791. doi: 10.1016/j.celrep.2017.08.095.
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